PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.340960.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB
Protein Properties Length: 298aa    MW: 33055.5 Da    PI: 6.9144
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.340960.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding568.9e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+lv+++  +G g+W+++++  g+ R++k+c++rw +yl
   Cucsa.340960.1 14 RGLWSPEEDEKLVNYISTYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                     788*******************************************97 PP

2Myb_DNA-binding483e-1567110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E  l+v+++  lG++ W+ Ia+ ++ gRt++++k++w++
   Cucsa.340960.1  67 RGSFSPQEASLIVQLHSILGNR-WAQIAKQLP-GRTDNEVKNFWNS 110
                      899*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-26664IPR009057Homeodomain-like
PROSITE profilePS5129424.621965IPR017930Myb domain
SuperFamilySSF466893.11E-2911108IPR009057Homeodomain-like
SMARTSM007171.2E-131363IPR001005SANT/Myb domain
PfamPF002494.6E-161461IPR001005SANT/Myb domain
CDDcd001672.02E-121761No hitNo description
Gene3DG3DSA:1.10.10.601.5E-2365115IPR009057Homeodomain-like
PROSITE profilePS5129417.72766116IPR017930Myb domain
SMARTSM007179.2E-1566114IPR001005SANT/Myb domain
PfamPF002491.1E-1367110IPR001005SANT/Myb domain
CDDcd001671.37E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGHHSCCNKQ KVKRGLWSPE EDEKLVNYIS TYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SPQEASLIVQ LHSILGNRWA QIAKQLPGRT DNEVKNFWNS NIKKNFDHLI  120
DYKLDQFTNL NPNANLVHLL PSISSSTNFS PHDPRPMWPS SGGYRLQPLD SDQPVVASGE  180
FVTPAATLPQ YVDISFLHPT TTMPKLCEVG EENICSSIPQ IPAPLQDLDP IIKLSSFSNG  240
YYPQDQCMVT NQMAMEQIDM IMSSILQNPP CSSLSSSSSS LGLTGLSNDL VSSSWDA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-31141177109B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818270.0LN681827.1 Cucumis melo genomic scaffold, anchoredscaffold00018.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004141218.11e-117PREDICTED: transcription factor MYB86
TrEMBLA0A0A0LGA81e-117A0A0A0LGA8_CUCSA; Uncharacterized protein
STRINGPOPTR_0001s20370.11e-80(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30143168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.23e-77myb domain protein 26